You have done a commendable job in restoring the powertrain control system.
I just checked the ASE site for anything related, and found nothing.
The only thing I could contribute are two---
1) Seriously look at ALL of the grounds.Do a voltage drop test on all of them. The system may be trying to feed a circuit backwards if it can't find its dedicated connection.
2) Try a little retro diagnostics. Even though this vehicle is OBD II compliant, and the protocol is in place and active, the OLD diagnostics are still in most of the Chrysler products as well.
Try cycling the key on, off,on, off, and then on within 5 seconds and watch the MIL. It should still flash out codes, and if it does, refer to the same make, model and engine for a 1995 for diagnostic procedures.
For a clearer discussion of the procedure and description of the codes, Go Here----->
http://autorepair.about.com/library/ts/obd-i/bl-dtcs-75a.htm.
And as you are now no doubt aware, diagnose the circuit or system and NOT just the component.
Good Luck